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McClellanville Library

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Phone: (843) 588-2001

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Phone: (843) 889-3300

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Phone: (843) 559-1945

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Phone: (843) 572-4094

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Phone: (843) 766-2546

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Subject : massachusetts institute of technology Publisher : oxford university press / usa Filter by : Subject

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Academic Journal

PyCoMo: a python package for community metabolic model creation and analysis.

Authors : Predl, Michael^1,2 (AUTHOR); Mießkes, Marianne^3,4 (AUTHOR); Rattei, Thomas^1,2 (AUTHOR)

Subjects: *METABOLIC models; *SYNTROPHISM; *BIOGASMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Apr2024, Vol. 40 Issue 4, p1-4. 4p.

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Academic Journal

GINSA: an accumulator for paired locality and next-generation small ribosomal subunit sequence data.

Authors : Odle, Eric¹ (AUTHOR) ; Kahng, Samuel^2,3 (AUTHOR); Riewluang, Siratee¹ (AUTHOR)

Subjects: *INFORMATION superhighway; *INTERNATIONAL agencies; *PYTHON programming languageMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Apr2024, Vol. 40 Issue 4, p1-4. 4p.

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Academic Journal

CLAUDIO: automated structural analysis of cross-linking data.

Authors : Röhl, Alexander^1,2 (AUTHOR); Netz, Eugen^1,2 (AUTHOR); Kohlbacher, Oliver^1,2,3 (AUTHOR)

Subjects: *DATA analysis; *PROTEIN structure; *SOFTWARE development toolsMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Apr2024, Vol. 40 Issue 4, p1-4. 4p.

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Academic Journal

GPro: generative AI-empowered toolkit for promoter design.

Authors : Wang, Haochen^1,2,3,4 (AUTHOR); Du, Qixiu^1,2,3,4 (AUTHOR); Wang, Ye^1,2,3,4 (AUTHOR)

Subjects: *GENERATIVE artificial intelligence; *SOURCE code; *RESEARCH personnelMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Mar2024, Vol. 40 Issue 3, p1-4. 4p.

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Academic Journal

EvoAug-TF: extending evolution-inspired data augmentations for genomic deep learning to TensorFlow.

Authors : Yu, Yiyang¹ (AUTHOR); Muthukumar, Shivani² (AUTHOR); Koo, Peter K¹ (AUTHOR)

Subjects: *ARTIFICIAL neural networks; *DATA augmentation; *DEEP learningMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Mar2024, Vol. 40 Issue 3, p1-4. 4p.

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Academic Journal

Bioframe: operations on genomic intervals in Pandas dataframes.

Authors : Abdennur, Nezar^1,2 (AUTHOR) ; Fudenberg, Geoffrey³ (AUTHOR) ; Flyamer, Ilya M⁴ (AUTHOR)

Subjects: *INTERVAL analysis; *DATA structures; *COMPUTATIONAL biologyMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Feb2024, Vol. 40 Issue 2, p1-4. 4p.

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Academic Journal

VariantDetective: an accurate all-in-one pipeline for detecting consensus bacterial SNPs and SVs.

Authors : Charron, Philippe¹ (AUTHOR) ; Kang, Mingsong¹ (AUTHOR)

Subjects: *SINGLE nucleotide polymorphisms; *SPECIES diversity; *BACTERIAL evolutionMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Feb2024, Vol. 40 Issue 2, p1-4. 4p.

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Academic Journal

vcfpp: a C++ API for rapid processing of the variant call format.

Authors : Li, Zilong¹ (AUTHOR)

Subjects: *C++; *PROGRAMMING languages; *BIG dataMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Feb2024, Vol. 40 Issue 2, p1-4. 4p.

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Academic Journal

Scbean: a python library for single-cell multi-omics data analysis.

Authors : Zhang, Haohui¹ (AUTHOR); Wang, Yuwei¹ (AUTHOR); Lian, Bin¹ (AUTHOR)

Subjects: *MULTIOMICS; *DATA analysis; *ENGINEERING modelsMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Feb2024, Vol. 40 Issue 2, p1-4. 4p.

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Academic Journal

GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function.

Authors : Miller, Danielle¹ (AUTHOR); Arias, Ofir¹ (AUTHOR); Burstein, David¹ (AUTHOR)

Subjects: *MICROBIAL genes; *LANGUAGE models; *WEB-based user interfacesMASSACHUSETTS Institute of Technology

Source: Bioinformatics. Feb2024, Vol. 40 Issue 2, p1-4. 4p.

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